Publications of Tatiana Domratcheva

Journal Article (30)

1.
Journal Article
Grigorenko, B. L.; Domratcheva, T.; Polyakov, I. V.; Nemukhin, A. V.: Protonation states of molecular groups in the chromophore-binding site modulate properties of the reversibly switchable fluorescent protein rsEGFP2. ChemRxiv, pp. 1 - 26 (2021)
2.
Journal Article
Sorigué, D.; Hadjidemetriou, K.; Blangy, S.; Gotthard, G.; Bonvalet, A.; Coquelle, N.; Samire, P.; Aleksandrov, A.; Antonucci, L.; Benachir, A. et al.; Boutet, S.; Byrdin, M.; Cammarata, M.; Carbajo, S.; Cuiné, S.; Doak, R. B.; Foucar, L.; Gorel, A.; Grünbein, M.; Hartmann, E.; Hienerwadel, R.; Hilpert, M.; Kloos, M.; Lane, T. J.; Légeret, B.; Legrand, P.; Li-Beisson, Y.; Moulin, S. L. Y.; Nurizzo, D.; Peltier, G.; Schirò, G.; Shoeman, R. L.; Sliwa, M.; Solinas, X.; Zhuang, B.; Barends, T. R. M.; Colletier, J.-P.; Joffre, M.; Royant, A.; Berthomieu, C.; Weik, M.; Domratcheva, T.; Brettel, K.; Vos, M. H.; Schlichting, I.; Arnoux, P.; Müller, P.; Beisson, F.: Mechanism and dynamics of fatty acid photodecarboxylase. Science 372 (6538), eabd5687, pp. 1 - 13 (2021)
3.
Journal Article
Gromov, E. V.; Domratcheva, T.: Four resonance structures elucidate double-bond isomerisation of a biological chromophore. Physical Chemistry Chemical Physics 22 (16), pp. 8535 - 8544 (2020)
4.
Journal Article
Nass Kovács, G.; Colletier, J.-P.; Grünbein, M. L.; Yang, Y.; Stensitzki, T.; Batyuk, A.; Carbajo, A.; Doak, R. B.; Ehrenberg, D.; Foucar, L. et al.; Gasper, R.; Gorel, A.; Hilpert, M.; Kloos, M.; Koglin, J. E.; Reinstein, J.; Roome, C. M.; Schlesinger, R.; Seaberg, M.; Shoeman, R. L.; Stricker, M.; Boutet, S.; Haacke , S.; Heberle, J.; Heyne, K.; Domratcheva, T.; Barends, T. R.M.; Schlichting, I.: Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin. Nature Communications 10, 3177, pp. 1 - 17 (2019)
5.
Journal Article
Domratcheva, T.; Schlichting, I.: Spiers Memorial Lecture. Introductory lecture: the impact of structure on photoinduced processes in nucleic acids and proteins. Faraday Discussions 207, pp. 9 - 26 (2018)
6.
Journal Article
Jian, Y.; Maximowitsch, E.; Liu, D.; Adhikari, S.; Li, L.; Domratcheva, T.: Indications of 5' to 3' interbase electron transfer as the first step of pyrimidine dimer formation probed by a dinucleotide analog. Chemistry – A European Journal 23 (31), pp. 7526 - 7537 (2017)
7.
Journal Article
Khrenova, M. G.; Domratcheva, T.; Nemukhin, A. V.: Molecular mechanism of the dark-state recovery in BLUF photoreceptors. Chemical Physics Letters 676, pp. 25 - 31 (2017)
8.
Journal Article
Wijaya, I. M. M.; Domratcheva, T.; Iwata, T.; Getzoff, E. D.; Kandori, H.: Singlehydrogen bond donation from flavin N5 to proximal asparagine ensures FAD reduction in DNA photolyase. Journal of the American Chemical Society 138 (13), pp. 4368 - 4376 (2016)
9.
Journal Article
Domratcheva, T.; Hartmann, E.; Schlichting, I.; Kottke, T.: Evidence for tautomerisation of glutamine in BLUF blue light receptors by vibrational spectroscopy and computational chemistry. Scientific Reports 6, 22669 , pp. 1 - 14 (2016)
10.
Journal Article
Solov'yov, I. A.; Domratcheva, T.; Schulten, K.: Separation of photo-induced radical pair in cryptochrome to a functionally critical distance. Scientific Reports 4, 3845, pp. 1 - 8 (2014)
11.
Journal Article
Shahi, A. R. M.; Domratcheva, T.: Challenges in computing electron-transfer energies of DNA repair using hybrid QM/MM models. Journal of Chemical Theory and Computation 9 (10), pp. 4644 - 4652 (2013)
12.
Journal Article
Udvarhelyi, A.; Domratcheva, T.: Glutamine rotamers in BLUF photoreceptors: a mechanistic reappraisal. Journal of Physical Chemistry B 117 (10), pp. 2888 - 2897 (2013)
13.
Journal Article
Khrenova, M. G.; Nemukhin, A. V.; Domratcheva, T.: Photoinduced electron transfer facilitates tautomerization of the conserved signaling glutamine side chain in BLUF protein light sensors. Journal of Physical Chemistry B 117 (8), pp. 2369 - 2377 (2013)
14.
Journal Article
Solov'yov, I. A.; Domratcheva, T.; Moughal Shahi, A. R.; Schulten, K.: Decrypting cryptochrome: revealing the molecular identity of the photoactivation reaction. Journal of the American Chemical Society 134 (43), pp. 18046 - 18052 (2012)
15.
Journal Article
Domratcheva, T.: Neutral histidine and photoinduced electron transfer in DNA photolyases. Journal of the American Chemical Society 133 (45), pp. 18172 - 18182 (2011)
16.
Journal Article
Wolf, M. M. N.; Zimmermann, H.; Diller, R.; Domratcheva, T.: Vibrational mode analysis of isotope-labeled electronically excited riboflavin. The Journal of Physical Chemistry B 115 (23), pp. 7621 - 7628 (2011)
17.
Journal Article
Khrenova, M. G.; Domratcheva, T.; Schlichting, I.; Grigorenko, B. L.; Nemukhin, A. V.: Computational characterization of reaction intermediates in the photocycle of the sensory domain of the AppA blue light photoreceptor. Photochemistry and Photobiology 87 (3), pp. 564 - 573 (2011)
18.
Journal Article
Udvarhelyi, A.; Domratcheva, T.: Photoreaction in BLUF receptors: proton-coupled electron transfer in the Flavin-Gln-Tyr system. Photochemistry and Photobiology 87 (3), pp. 554 - 563 (2011)
19.
Journal Article
Lai, J.; Niks, D.; Wang, Y.; Domratcheva, T.; Barends, T.; Schwarz, F.; Olsen, R. A.; Elliott, D. W.; Fatmi, M. Q.; Chang, C. A. et al.; Schlichting, I.; Dunn, M. F.; Mueller, L.: X-ray and NMR crystallography in an enzyme active site: the indoline quinonoid intermediate in tryptophan synthase. Journal of the American Chemical Society 133 (1), pp. 4 - 7 (2011)
20.
Journal Article
Khrenova, M. G.; Nemukhin, A. V.; Grigorenko, B. L.; Krylov, A. I.; Domratcheva, T.: Quantum chemistry calculations provide support to the mechanism of the light-induced structural changes in the flavin-binding photoreceptor proteins. Journal of Chemical Theory and Computation 6 (8), pp. 2293 - 2302 (2010)
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