Publikationen von Tatiana Domratcheva

Zeitschriftenartikel (32)

1.
Zeitschriftenartikel
Giannos, T.; Lešnik, S.; Bren, U.; Hodošček, M.; Domratcheva, T.; Bondar, A.-N.: CHARMM force-field parameters for morphine, heroin, and oliceridine, and conformational dynamics of opioid drugs. Journal of Chemical Information and Modeling 61 (8), S. 3964 - 3977 (2021)
2.
Zeitschriftenartikel
Grigorenko, B. L.; Domratcheva, T.; Polyakov, I. V.; Nemukhin, A. V.: Protonation states of molecular groups in the chromophore-binding site modulate properties of the reversibly switchable fluorescent protein rsEGFP2. The Journal of Physical Chemistry Letters 12, S. 8263 - 8271 (2021)
3.
Zeitschriftenartikel
Sorigué, D.; Hadjidemetriou, K.; Blangy, S.; Gotthard, G.; Bonvalet, A.; Coquelle, N.; Samire, P.; Aleksandrov, A.; Antonucci, L.; Benachir, A. et al.; Boutet, S.; Byrdin, M.; Cammarata, M.; Carbajo, S.; Cuiné, S.; Doak, R. B.; Foucar, L.; Gorel, A.; Grünbein, M.; Hartmann, E.; Hienerwadel, R.; Hilpert, M.; Kloos, M.; Lane, T. J.; Légeret, B.; Legrand, P.; Li-Beisson, Y.; Moulin, S. L. Y.; Nurizzo, D.; Peltier, G.; Schirò, G.; Shoeman, R. L.; Sliwa, M.; Solinas, X.; Zhuang, B.; Barends, T. R. M.; Colletier, J.-P.; Joffre, M.; Royant, A.; Berthomieu, C.; Weik, M.; Domratcheva, T.; Brettel, K.; Vos, M. H.; Schlichting, I.; Arnoux, P.; Müller, P.; Beisson, F.: Mechanism and dynamics of fatty acid photodecarboxylase. Science 372 (6538), eabd5687, S. 1 - 13 (2021)
4.
Zeitschriftenartikel
Mroginski, M.-A.; Adam, S.; Amoyal, G. S.; Barnoy, A.; Bondar, A.-N.; Borin, V. A.; Church, J. R.; Domratcheva, T.; Ensing, B.; Fanelli, F. et al.; Ferré, N.; Filiba, O.; Pedraza-González, L.; González, R.; González-Espinoza, C. E.; Kar, R. K.; Kemmler, L.; Kim, S. S.; Kongsted, J.; Krylov, A. I.; Lahav, Y.; Lazaratos, M.; NasserEddin, Q.; Navizet, I.; Nemukhin, A.; Olivucci, M.; Olsen, J. M. H.; de Ortíz, A. P. A.; Pieri, E.; Rao, A. G.; Rhee, Y. M.; Ricardi, N.; Sen, S.; Solov'yov, I. A.; Vico, L. D.; Wesolowski, T. A.; Wiebeler, C.; Yang, X.; Schapiro, I.: Frontiers in multiscale modeling of photoreceptor proteins. Photochemistry and Photobiology 97 (2), S. 243 - 269 (2021)
5.
Zeitschriftenartikel
Gromov, E. V.; Domratcheva, T.: Four resonance structures elucidate double-bond isomerisation of a biological chromophore. Physical Chemistry Chemical Physics 22 (16), S. 8535 - 8544 (2020)
6.
Zeitschriftenartikel
Nass Kovács, G.; Colletier, J.-P.; Grünbein, M. L.; Yang, Y.; Stensitzki, T.; Batyuk, A.; Carbajo, A.; Doak, R. B.; Ehrenberg, D.; Foucar, L. et al.; Gasper, R.; Gorel, A.; Hilpert, M.; Kloos, M.; Koglin, J. E.; Reinstein, J.; Roome, C. M.; Schlesinger, R.; Seaberg, M.; Shoeman, R. L.; Stricker, M.; Boutet, S.; Haacke , S.; Heberle, J.; Heyne, K.; Domratcheva, T.; Barends, T. R.M.; Schlichting, I.: Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin. Nature Communications 10, 3177, S. 1 - 17 (2019)
7.
Zeitschriftenartikel
Domratcheva, T.; Schlichting, I.: Spiers Memorial Lecture. Introductory lecture: the impact of structure on photoinduced processes in nucleic acids and proteins. Faraday Discussions 207, S. 9 - 26 (2018)
8.
Zeitschriftenartikel
Jian, Y.; Maximowitsch, E.; Liu, D.; Adhikari, S.; Li, L.; Domratcheva, T.: Indications of 5' to 3' interbase electron transfer as the first step of pyrimidine dimer formation probed by a dinucleotide analog. Chemistry – A European Journal 23 (31), S. 7526 - 7537 (2017)
9.
Zeitschriftenartikel
Khrenova, M. G.; Domratcheva, T.; Nemukhin, A. V.: Molecular mechanism of the dark-state recovery in BLUF photoreceptors. Chemical Physics Letters 676, S. 25 - 31 (2017)
10.
Zeitschriftenartikel
Wijaya, I. M. M.; Domratcheva, T.; Iwata, T.; Getzoff, E. D.; Kandori, H.: Singlehydrogen bond donation from flavin N5 to proximal asparagine ensures FAD reduction in DNA photolyase. Journal of the American Chemical Society 138 (13), S. 4368 - 4376 (2016)
11.
Zeitschriftenartikel
Domratcheva, T.; Hartmann, E.; Schlichting, I.; Kottke, T.: Evidence for tautomerisation of glutamine in BLUF blue light receptors by vibrational spectroscopy and computational chemistry. Scientific Reports 6, 22669 , S. 1 - 14 (2016)
12.
Zeitschriftenartikel
Solov'yov, I. A.; Domratcheva, T.; Schulten, K.: Separation of photo-induced radical pair in cryptochrome to a functionally critical distance. Scientific Reports 4, 3845, S. 1 - 8 (2014)
13.
Zeitschriftenartikel
Shahi, A. R. M.; Domratcheva, T.: Challenges in computing electron-transfer energies of DNA repair using hybrid QM/MM models. Journal of Chemical Theory and Computation 9 (10), S. 4644 - 4652 (2013)
14.
Zeitschriftenartikel
Udvarhelyi, A.; Domratcheva, T.: Glutamine rotamers in BLUF photoreceptors: a mechanistic reappraisal. Journal of Physical Chemistry B 117 (10), S. 2888 - 2897 (2013)
15.
Zeitschriftenartikel
Khrenova, M. G.; Nemukhin, A. V.; Domratcheva, T.: Photoinduced electron transfer facilitates tautomerization of the conserved signaling glutamine side chain in BLUF protein light sensors. Journal of Physical Chemistry B 117 (8), S. 2369 - 2377 (2013)
16.
Zeitschriftenartikel
Solov'yov, I. A.; Domratcheva, T.; Moughal Shahi, A. R.; Schulten, K.: Decrypting cryptochrome: revealing the molecular identity of the photoactivation reaction. Journal of the American Chemical Society 134 (43), S. 18046 - 18052 (2012)
17.
Zeitschriftenartikel
Domratcheva, T.: Neutral histidine and photoinduced electron transfer in DNA photolyases. Journal of the American Chemical Society 133 (45), S. 18172 - 18182 (2011)
18.
Zeitschriftenartikel
Wolf, M. M. N.; Zimmermann, H.; Diller, R.; Domratcheva, T.: Vibrational mode analysis of isotope-labeled electronically excited riboflavin. The Journal of Physical Chemistry B 115 (23), S. 7621 - 7628 (2011)
19.
Zeitschriftenartikel
Khrenova, M. G.; Domratcheva, T.; Schlichting, I.; Grigorenko, B. L.; Nemukhin, A. V.: Computational characterization of reaction intermediates in the photocycle of the sensory domain of the AppA blue light photoreceptor. Photochemistry and Photobiology 87 (3), S. 564 - 573 (2011)
20.
Zeitschriftenartikel
Udvarhelyi, A.; Domratcheva, T.: Photoreaction in BLUF receptors: proton-coupled electron transfer in the Flavin-Gln-Tyr system. Photochemistry and Photobiology 87 (3), S. 554 - 563 (2011)
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