Publications of Thomas R. M. Barends

Dietl, A.; Wellach, K.; Mahadevan, P.; Mertes, N.; Winter, S. L.; Kutsch, T.; Walz, C.; Schlichting, I.; Fabritz, S.; Barends, T. R. M.: Structures of an unusual 3-hydroxyacyl dehydratase (FabZ) from a ladderane-producing organism with an unexpected substrate preference. The Journal of Biological Chemistry 299 (5), 104602, pp. 1 - 15 (2023)

Barends, T. R.M.; Bhattacharyya, S.; Gorel, A.; Schiro, G.; Bacellar, C.; Cirelli, C.; Colletier, J.-P.; Foucar, L.; Grünbein, M. L.; Hartmann, E. et al.; Hilpert, M.; Johnson, P. J.M.; Kloos, M.; Knopp, G.; Marekha, B.; Nass, K.; Nass Kovacs, G.; Ozerov, D.; Stricker, M.; Weik, M.; Doak, R. B.; Shoeman, R. L.; Milne, C. J.; Huix-Rotllant, M.; Cammarata, M.; Schlichting, I.: Influence of pump laser fluence on ultrafast structural changes in myoglobin. bioRxiv, 517513, pp. 1 - 44 (2022)

Adam, V.; Hadjidemetriou, K.; Jensen, N.; Shoeman, R. L.; Woodhouse, J.; Aquila, A.; Banneville, A.-S.; Barends, T. R. M.; Bezchastnov, V.; Boutet, S. et al.; Byrdin, M.; Cammarata, M.; Carbajo, S.; Christou, N. E.; Coquelle, N.; la Mora, E. D.; Khatib, M. E.; Chicano, T. M.; Doak, R. B.; Fieschi, F.; Foucar, L.; Glushonkov, O.; Gorel, A.; Grünbein, M. L.; Hilpert, M.; Hunter, M.; Kloos, M.; Koglin, J. E.; Lane, T. J.; Liang, M.; Mantovanelli, A.; Nass, K.; Nass Kovacs, G.; Owada, S.; Roome, C. M.; Schirò, G.; Seaberg, M.; Stricker, M.; Thépaut, M.; Tono, K.; Ueda, K.; Uriarte, L. M.; You, D.; Zala, N.; Domratcheva, T.; Jakobs, S.; Sliwa, M.; Schlichting, I.; Colletier, J.-P.; Bourgeois, D.; Weik, M.: Rational control of structural off-state heterogeneity in a photoswitchable fluorescent protein provides switching contrast enhancement. ChemPhysChem 23 (19), e202200192, pp. 1 - 11 (2022)

Adam, V.; Hadjidemetriou, K.; Jensen, N.; Shoeman, R. L.; Woodhouse, J.; Aquila, A.; Banneville, A.-S.; Barends, T. R. M.; Bezchastnov, V.; Boutet, S. et al.; Byrdin, M.; Cammarata, M.; Carbajo, S.; Christou, N. E.; Coquelle, N.; la Mora, E. D.; Khatib, M. E.; Chicano, T. M.; Doak, R. B.; Fieschi, F.; Foucar, L.; Glushonkov, O.; Gorel, A.; Grünbein, M. L.; Hilpert, M.; Hunter, M.; Kloos, M.; Koglin, J. E.; Lane, T. J.; Liang, M.; Mantovanelli, A.; Nass, K.; Nass Kovacs, G.; Owada, S.; Roome, C. M.; Schirò, G.; Seaberg, M.; Stricker, M.; Thépaut, M.; Tono, K.; Ueda, K.; Uriarte, L. M.; You, D.; Zala, N.; Domratcheva, T.; Jakobs, S.; Sliwa, M.; Schlichting, I.; Colletier, J.-P.; Bourgeois, D.; Weik, M.: Cover Feature: Rational control of structural off-state heterogeneity in a photoswitchable fluorescent protein provides switching contrast enhancement (ChemPhysChem 19/2022). ChemPhysChem 23 (19), e202200693, p. 1 - 1 (2022)

Hadjidemetriou, K.; Coquelle, N.; Barends, T. R. M.; De, E.; Zitter; Schlichting, I.; Colletiera, J.-P.; Weik, M.: Time-resolved serial femtosecond crystallography on fatty-acid photodecarboxylase: lessons learned. Acta Crystallographica Section D: Structural Biology 78 (9), pp. 1131 - 1142 (2022)

Barends, T. R. M.; Stauch, B.; Cherezov, V.; Schlichting, I.: Serial femtosecond crystallography. Nature Reviews Methods primers 2, 59, pp. 1 - 24 (2022)

Zitter, E. D.; Coquelle, N.; Barends, T. R.; Colletier, J.-P.: Xtrapol8: automatic elucidation of low-occupancy intermediate-states in crystallographic studies. Communications Biology 5, 640, pp. 1 - 11 (2022)

Dietl, A.; Barends, T. R.M.: Dynamics in an unusual acyl carrier protein (ACP) from a ladderane lipid-synthesizing organism. Proteins: Structure, Function, and Bioinformatics 90 (1), pp. 73 - 82 (2022)

Schmitz, R. A.; Picone, N.; Singer, H.; Dietl, A.; Seifert, K.-A.; Pol, A.; Jetten, M. S. M.; Barends, T. R. M.; Daumann, L. J.; Op den Camp, H. J. M.: Neodymium as metal cofactor for biological methanol oxidation: structure and kinetics of an XoxF1-Type methanol dehydrogenase. mBio 12 (5), e0170821, pp. 1 - 14 (2021)

Chicano, T. M.; Dietrich, L.; de Almeida, N. M.; Akram, M.; Hartmann, E.; Leidreiter, F.; Leopoldus, D.; Müller, M.; Sanchez, R. M.; Nuijten, G. H. L. et al.; Reimann, J.; Seifert, K.-A.; Schlichting, I.; van Niftrik, L.; Jetten, M. S. M.; Dietl, A.; Kartal, B.; Parey, K.; Barends, T. R. M.: Structural and functional characterization of the intracellular filament-forming nitrite oxidoreductase multiprotein complex. Nature Microbiology 6 (9), pp. 1129 - 1139 (2021)

Akram, M.; Bock, J.; Dietl, A.; Barends, T. R.M.: Specificity of small c-type cytochromes in anaerobic ammonium oxidation. ACS Omega 6 (33), pp. 21457 - 21464 (2021)

Gorel, A.; Schlichting, I.; Barends, T. R. M.: Discerning best practices in XFEL-based biological crystallography – standards for nonstandard experiments. IUCrJ 8 (4), pp. 532 - 543 (2021)

Sorigué, D.; Hadjidemetriou, K.; Blangy, S.; Gotthard, G.; Bonvalet, A.; Coquelle, N.; Samire, P.; Aleksandrov, A.; Antonucci, L.; Benachir, A. et al.; Boutet, S.; Byrdin, M.; Cammarata, M.; Carbajo, S.; Cuiné, S.; Doak, R. B.; Foucar, L.; Gorel, A.; Grünbein, M.; Hartmann, E.; Hienerwadel, R.; Hilpert, M.; Kloos, M.; Lane, T. J.; Légeret, B.; Legrand, P.; Li-Beisson, Y.; Moulin, S. L. Y.; Nurizzo, D.; Peltier, G.; Schirò, G.; Shoeman, R. L.; Sliwa, M.; Solinas, X.; Zhuang, B.; Barends, T. R. M.; Colletier, J.-P.; Joffre, M.; Royant, A.; Berthomieu, C.; Weik, M.; Domratcheva, T.; Brettel, K.; Vos, M. H.; Schlichting, I.; Arnoux, P.; Müller, P.; Beisson, F.: Mechanism and dynamics of fatty acid photodecarboxylase. Science 372 (6538), eabd5687, pp. 1 - 13 (2021)

Akram, M.; Dietl, A.; Müller, M.; Barends, T. R. M.: Purification of the key enzyme complexes of the anammox pathway from DEMON sludge. Biopolymers 112 (6), e23428, pp. 1 - 11 (2021)

Grünbein, M. L.; Gorel, A.; Foucar, L.; Carbajo, S.; Colocho, W.; Gilevich, S.; Hartmann, E.; Hilpert, M.; Hunter, M.; Kloos, M. et al.; Koglin, J. E.; Lane, T. J.; Lewandowski, J.; Lutman, A.; Nass, K.; Nass Kovács, G.; Roome, C. M.; Sheppard, J.; Shoeman, R. L.; Stricker, M.; van Driel, T.; Vetter, S.; Doak, R. B.; Boutet, S.; Aquila, A.; Decker, F. J.; Barends, T. R. M.; Stan, C. A.; Schlichting, I.: Effect of X-ray free-electron laser-induced shockwaves on haemoglobin microcrystals delivered in a liquid jet. Nature Communications 12 (1), 1672, pp. 1 - 11 (2021)

Grünbein, M. L.; Foucar, L.; Gorel, A.; Hilpert, M.; Kloos, M.; Nass, K.; Nass Kovacs, G.; Roome, C. M.; Shoeman, R. L.; Stricker, M. et al.; Carbajo, S.; Colocho, W.; Gilevich, S.; Hunter, M.; Lewandowski, J.; Lutman, A.; Koglin, J. E.; Lane, T. J.; van Driel, T.; Sheppard, J.; Vetter, S. L.; Turner, J. L.; Doak, R. B.; Barends, T. R. M.; Boutet, S.; Aquila, A. L.; Decker, F.-J.; Schlichting, I.; Stan, C. A.: Observation of shock-induced protein crystal damage during megahertz serial femtosecond crystallography. Physical Review Research 3, 013046 , pp. 1 - 16 (2021)

De Zitter, E.; Coquelle, N.; Barends, T.; Colletier, J.-P.: Interactive GUI for the calculation of Fobs-Fobs electron density difference maps and extrapolated structure factors based on the cctbx toolbox. Acta Crystallographica Section A: Foundations and Advances 77, MS-92-6, p. C586 - C586 (2021)

Gorel, A.; Grünbein, M. L.; Bean, R.; Bielecki, J.; Hilpert, M.; Cascella, M.; Colletier, J.-P.; Fangohr, H.; Foucar, L.; Hartmann, E. et al.; Hunter, M. S.; Kirkwood, H.; Kloos, M.; Letrun, R.; Michelat, T.; Shoeman, R. L.; Sztuk-Dambietz, J.; Tetreau, G.; Zimmermann, H.; Mancuso, A. P.; Barends, T. R.M.; Doak, R. B.; Stan, C. A.; Schlichting, I.: Shock damage analysis in serial femtosecond crystallography data collected at MHz X-ray free-electron lasers. Crystals 10 (12), 1145, pp. 1 - 12 (2020)

Schmitz, R. A.; Dietl, A.; Müller, M.; Berben, T.; Op den Camp, H. J. M.; Barends, T. R. M.: Structure of the 4-hydroxy-tetrahydrodipicolinate synthase from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV and the phylogeny of the aminotransferase pathway. Acta Crystallographica Section F: Structural Biology and Crystallization Communications 76 (5), pp. 199 - 208 (2020)

Nass, K.; Gorel, A.; Abdullah, M. M.; Martin, A. V.; Kloos, M.; Marinelli, A.; Aquila, A.; Barends, T. R. M.; Decker, F.-J.; Doak, R. B. et al.; Foucar, L.; Hartmann, E.; Hilpert, M.; Hunter, M. S.; Jurek, Z.; Koglin, J. E.; Kozlov, A.; Lutman, A. A.; Nass Kovács, G.; Roome, C. M.; Shoeman, R. L.; Santra, R.; Quiney, H. M.; Ziaja, B.; Boutet, S.; Schlichting, I.: Structural dynamics in proteins induced by and probed with X-ray free-electron laser pulses. Nature Communications 11 (1), 1814 (2020), pp. 1 - 9 (2020)